ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR398
source: miRBase, original name: rco-MIR398a (MI0013420)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCTT miRNA* GGAGTGGCTCCCTGAGAACACACG mismatches: 1 bulges: 3 |
pre-miRNA
CCAGAGGAGTGGCTCCCTGAGAACACACGTGCATTGGCTCTCACCTTTTGTAGTTCCACTGCACCTGTGTTCTCAGGTCACCCCTTTGGGG
dot-bracket secondary structure
(((((((.((((...((((((((((((.(((((.(((..((((.....)).))..))).))))).)))))))))))))))).)))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
CCAGAGGAGTGGCTCCCTGAGAACACACGTGCATTGGCTCTCACCTTTTGTAGTTCCACTGCACCTGTGTTCTCAGGTCACCCCTTTGGGG
dot-bracket secondary structure
(((((((.((((...((((((((((((.(((((.(((..((((.....)).))..))).))))).)))))))))))))))).)))))))..
SIMILARITIES| miRBase ptc-MIR398a: 0.00000002 PMRD ptc-miRf11166-akr: 0.00000002 microPC miR398: 0.00007 | UniProt no hits RFAM MIR398: 2e-45 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
