ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR398
source: miRBase, original name: rco-MIR398b (MI0013421)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCTG miRNA* GGAGCGACCTGAGAATCACATG mismatches: 1 bulges: 1 |
pre-miRNA
CTACAGGAGCGACCTGAGAATCACATGTGGACATTCTTAGCTATATATACCCTTATCATCTTCTCTTATTTTGGGTTTATTGTACTTTGGTGTTCTTTCA
TGTGTTCTCAGGTCGCCCCTGCCGGG
dot-bracket secondary structure
...((((.((((((((((((.((((((.(((((((...((.((((...((((....................))))....))))))..)))))))...))
)))))))))))))))).)))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
CTACAGGAGCGACCTGAGAATCACATGTGGACATTCTTAGCTATATATACCCTTATCATCTTCTCTTATTTTGGGTTTATTGTACTTTGGTGTTCTTTCA
TGTGTTCTCAGGTCGCCCCTGCCGGG
dot-bracket secondary structure
...((((.((((((((((((.((((((.(((((((...((.((((...((((....................))))....))))))..)))))))...))
)))))))))))))))).)))).....
SIMILARITIES| miRBase ptc-MIR398b: 0.0000000004 PMRD ptc-miR398b: 0.0000000004 microPC miR398: 0.0000004 | UniProt no hits RFAM MIR398: 4e-66 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
