ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR399
source: miRBase, original name: rco-MIR399a (MI0013422)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGTTGCCCTG miRNA* GGGCACCTCTTGCTTGGCAGG mismatches: 3 bulges: 0 |
pre-miRNA
TTGTAGGGCACCTCTTGCTTGGCAGGTAAAGGGGACACTAGCTAGCATAACATCCCAATAACTTGCTTGCCAAAGGAGAGTTGCCCTGTGACT
dot-bracket secondary structure
(..(((((((.(((((..(((((((((((..((((...((.......))...))))......)))))))))))..))))).)))))))..)..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
TTGTAGGGCACCTCTTGCTTGGCAGGTAAAGGGGACACTAGCTAGCATAACATCCCAATAACTTGCTTGCCAAAGGAGAGTTGCCCTGTGACT
dot-bracket secondary structure
(..(((((((.(((((..(((((((((((..((((...((.......))...))))......)))))))))))..))))).)))))))..)..
SIMILARITIES| miRBase vvi-MIR399b: 0.000000005 PMRD vvi-miR399b: 0.000000005 microPC miR399: 0.000004 | UniProt no hits RFAM mir-399: 0.000005 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
