ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR399
source: miRBase, original name: rco-MIR399d (MI0013425)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGCTGCCCTG miRNA* GGGCATCTCTCGCTTGGCAGG mismatches: 3 bulges: 0 |
pre-miRNA
TCGTAGGGCATCTCTCGCTTGGCAGGCAATGATATGAAGTGAAGCTAAATTTTAGCATTAGTTTGATCCCAATGGCTTGCCAAAGGAGAGCTGCCCTGTG
ACT
dot-bracket secondary structure
((((((((((.(((((..(((((((((...(((.((((.(((.((((.....)))).))).)))))))......)))))))))..))))).)))))))))
)..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
TCGTAGGGCATCTCTCGCTTGGCAGGCAATGATATGAAGTGAAGCTAAATTTTAGCATTAGTTTGATCCCAATGGCTTGCCAAAGGAGAGCTGCCCTGTG
ACT
dot-bracket secondary structure
((((((((((.(((((..(((((((((...(((.((((.(((.((((.....)))).))).)))))))......)))))))))..))))).)))))))))
)..
SIMILARITIES| miRBase mtr-MIR399b: 0.00000008 PMRD mtr-miR399b: 0.00000008 microPC miR399: 0.00008 | UniProt no hits RFAM mir-399: 2e-52 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
