ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR399
source: miRBase, original name: rco-MIR399e (MI0013426)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGATTTGCCCAG miRNA* GGGCAAATATCTCCATTGGCAGG mismatches: 3 bulges: 2 |
pre-miRNA
TTACAGGGCAAATATCTCCATTGGCAGGTAGCCACTTTAGACATGCATTTAAATTTTGAGCATTATTTAACAGTGTGCCTTCTGCCAAAGGAGATTTGCC
CAGCAATT
dot-bracket secondary structure
.....((((((..((((((.((((((((..(((((((((((.((((.((........))))))..))))).)))).))..)))))))).)))))))))))
).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
TTACAGGGCAAATATCTCCATTGGCAGGTAGCCACTTTAGACATGCATTTAAATTTTGAGCATTATTTAACAGTGTGCCTTCTGCCAAAGGAGATTTGCC
CAGCAATT
dot-bracket secondary structure
.....((((((..((((((.((((((((..(((((((((((.((((.((........))))))..))))).)))).))..)))))))).)))))))))))
).......
SIMILARITIES| miRBase csi-MIR399a: 0.000000000001 PMRD vvi-miR399e: 0.000000001 microPC miR399: 0.000005 | UniProt no hits RFAM mir-399: 2e-55 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
