ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR403
source: miRBase, original name: rco-MIR403b (MI0013429)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATTCACGCACAAACTCG miRNA* AGTTTGTGCGTGAATCGAGCC mismatches: 2 bulges: 0 |
pre-miRNA
TCTCTAGTTTGTGCGTGAATCGAGCCCCATCATCAAGGCCGTTCATTTTGAGGCCCCACGAATCCAATGGTGTTAGATTCACGCACAAACTCGTGATC
dot-bracket secondary structure
((.(.((((((((((((((((.(((.((((..((..((((...........))))....)).....)))).))).)))))))))))))))).).))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
TCTCTAGTTTGTGCGTGAATCGAGCCCCATCATCAAGGCCGTTCATTTTGAGGCCCCACGAATCCAATGGTGTTAGATTCACGCACAAACTCGTGATC
dot-bracket secondary structure
((.(.((((((((((((((((.(((.((((..((..((((...........))))....)).....)))).))).)))))))))))))))).).))..
SIMILARITIES| miRBase rco-MIR403a: 0.000000000005 PMRD ptc-miR403b: 0.000000001 microPC miR403: 0.000001 | UniProt no hits RFAM MIR403: 1e-49 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
