ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR408
source: miRBase, original name: rco-MIR408 (MI0013430)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCACTGCCTCTTCCCTGGC miRNA* CTGGGAACAGGCAGTGCATGG mismatches: 5 bulges: 0 |
pre-miRNA
AAAGACTGGGAACAGGCAGTGCATGGATGGGGCTACTAACAGAAAACATCTGTTTTGGCTCTACCCCTGCACTGCCTCTTCCCTGGCTTCCG
dot-bracket secondary structure
.(((...(((((.((((((((((.((.((((((((..((((((.....)))))).)))))))).)).)))))))))).)))))...)))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
AAAGACTGGGAACAGGCAGTGCATGGATGGGGCTACTAACAGAAAACATCTGTTTTGGCTCTACCCCTGCACTGCCTCTTCCCTGGCTTCCG
dot-bracket secondary structure
.(((...(((((.((((((((((.((.((((((((..((((((.....)))))).)))))))).)).)))))))))).)))))...)))...
SIMILARITIES| miRBase ptc-MIR408: 5e-21 PMRD rco-miR408: 3e-47 microPC miR408: 5e-21 | UniProt no hits RFAM MIR408: 5e-46 |
Identical with: rco-miR408 from PMRD (MNEST054389) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
