ABOUT THIS RECORDspecies: Arachis hypogaea
miRNA family: MIR159
source: miRBase, original name: ahy-MIR159 (MI0015335)
Taxonomy by NCBI:
Arachis hypogaea Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTA miRNA* GAGCTCCTTGAAGTCCAACAG mismatches: 3 bulges: 0 |
pre-miRNA
AGTGGAGCTCCTTGAAGTCCAACAGAGGGTCTTGGTGGGTAGATTGAGCTGCTAAGCTATGGATCCCACAGTACTACCCATATATACCCCATTATGCAGT
GGTAGTTCTGCGGATTCCATATCCTGGGAGCTTCATTACCTTTCCACAGATCCTTATTTGGATTGAAGGGAGCTCTACATAGCATCCTCTTTCTAAT
dot-bracket secondary structure
.((((((((((((..(((((((..(((((((((((.((((((...(((((.(((.(.((((((..((.(((.(((((((.((((........))))..).
)))))).))).))..)))))).).))).)))))..))))))..))).))))))))..)))))))..))))))))))))...................
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"
AGTGGAGCTCCTTGAAGTCCAACAGAGGGTCTTGGTGGGTAGATTGAGCTGCTAAGCTATGGATCCCACAGTACTACCCATATATACCCCATTATGCAGT
GGTAGTTCTGCGGATTCCATATCCTGGGAGCTTCATTACCTTTCCACAGATCCTTATTTGGATTGAAGGGAGCTCTACATAGCATCCTCTTTCTAAT
dot-bracket secondary structure
.((((((((((((..(((((((..(((((((((((.((((((...(((((.(((.(.((((((..((.(((.(((((((.((((........))))..).
)))))).))).))..)))))).).))).)))))..))))))..))).))))))))..)))))))..))))))))))))...................
SIMILARITIES| miRBase rco-MIR159: 8e-25 PMRD ptc-miRf10271-akr: 8e-22 microPC miR159: 5e-94 | UniProt no hits RFAM MIR159: 1e-23 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"
