ABOUT THIS RECORDspecies: Arachis hypogaea
miRNA family: MIR160
source: miRBase, original name: ahy-MIR160 (MI0015336)
Taxonomy by NCBI:
Arachis hypogaea Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGAATGCCA miRNA* GCATGAAGGGAGTCACGCAGG mismatches: 3 bulges: 0 |
pre-miRNA
AAATATTCGAATTATGTGTCTGCCTGGCTCCCTGAATGCCATGTAAGTTAGTTTGTTAAGAAAAGATTAACAAACGTCTTATATGGCATGAAGGGAGTCA
CGCAGGCGATTCATTTTGAAACATAT
dot-bracket secondary structure
.....((((((.....(((((((.(((((((((..((((((((((((...(((((((((.......)))))))))..))))))))))))..)))))))))
.)))))))......))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"
AAATATTCGAATTATGTGTCTGCCTGGCTCCCTGAATGCCATGTAAGTTAGTTTGTTAAGAAAAGATTAACAAACGTCTTATATGGCATGAAGGGAGTCA
CGCAGGCGATTCATTTTGAAACATAT
dot-bracket secondary structure
.....((((((.....(((((((.(((((((((..((((((((((((...(((((((((.......)))))))))..))))))))))))..)))))))))
.)))))))......))))))......
SIMILARITIES| miRBase ahy-MIR160: 2e-67 PMRD vvi-miR160e: 0.0000004 microPC no hits | UniProt no hits RFAM mir-160: 0.0001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"
