ABOUT THIS RECORDspecies: Arachis hypogaea
miRNA family: MIR167
source: miRBase, original name: ahy-MIR167 (MI0015337)
Taxonomy by NCBI:
Arachis hypogaea Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTT miRNA* GATCATGTGGCAGTTTCACC mismatches: 1 bulges: 1 |
pre-miRNA
GATCATGCACCACTACAAGTTGAAGCTGCCAGCATGATCTTAACTTTCCCTCTCCTATGATTTGTTGGGGTGAGATCAGATCATGTGGCAGTTTCACCTA
GTTGTTGGAAGCATGAAT
dot-bracket secondary structure
..((((((.((((.((.((.(((((((((((.((((((((....((((((((..(........)..)))).))))..))))))))))))))))))).)).
)).).)))..))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"
GATCATGCACCACTACAAGTTGAAGCTGCCAGCATGATCTTAACTTTCCCTCTCCTATGATTTGTTGGGGTGAGATCAGATCATGTGGCAGTTTCACCTA
GTTGTTGGAAGCATGAAT
dot-bracket secondary structure
..((((((.((((.((.((.(((((((((((.((((((((....((((((((..(........)..)))).))))..))))))))))))))))))).)).
)).).)))..))))))..
SIMILARITIES| miRBase ahy-MIR167: 1e-62 PMRD vvi-miR167e: 0.000000002 microPC miR167: 1e-37 | UniProt no hits RFAM MIR167_1: 0.000000000002 |
Identical with: miR167 from microPC (MNEST044797) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"
