ABOUT THIS RECORDspecies: Arachis hypogaea
miRNA family: MIR408
source: miRBase, original name: ahy-MIR408 (MI0015340)
Taxonomy by NCBI:
Arachis hypogaea Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGCACTGCCTCTTCCCTGGC miRNA* TGGGAACAGGCAGAGCATGA mismatches: 3 bulges: 1 |
pre-miRNA
GAAGAAGAGATGACAAAGAACTGGGAACAGGCAGAGCATGAATGGAACTATCAATAGACACATTTTGTTCATTGACGCTCATGCACTGCCTCTTCCCTGG
CTCTCTCTTTCTTTTTCCTTCT
dot-bracket secondary structure
((((((((((.((...(((.(((((((.((((((.((((((.((......(((((..(((.....)))..))))))).)))))).)))))).))))).))
.))).)))))))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"
GAAGAAGAGATGACAAAGAACTGGGAACAGGCAGAGCATGAATGGAACTATCAATAGACACATTTTGTTCATTGACGCTCATGCACTGCCTCTTCCCTGG
CTCTCTCTTTCTTTTTCCTTCT
dot-bracket secondary structure
((((((((((.((...(((.(((((((.((((((.((((((.((......(((((..(((.....)))..))))))).)))))).)))))).))))).))
.))).)))))))))))).....
SIMILARITIES| miRBase ahy-MIR408: 5e-65 PMRD cpt-miR408: 0.00000002 microPC miR408: 0.000000006 | UniProt no hits RFAM MIR408: 0.000000007 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"
