ABOUT THIS RECORDspecies: Arachis hypogaea
source: miRBase, original name: ahy-MIR3512 (MI0015345)
Taxonomy by NCBI:
Arachis hypogaea Arachis Dalbergieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGCAAATGATGACAAATAGA miRNA* TCTGGGTTCGTTATTAGTGAA mismatches: 4 bulges: 1 |
pre-miRNA
GTTGAATTATAGTTACGATCTCTGGGTTCGTTATTAGTGAAACTGAGGTAGTGTGTGAAAAATCCATGTTTAAGCTTGCAAATGCAGTATTTCTTACTAT
TCGCAAATGATGACAAATAGACGGGACATCAGCACTCTAAG
dot-bracket secondary structure
(((((......((..((.(((.(..((.(((((((.(((((...((((((.(((((.........................))))).))))))......)
)))).)))))))))..).)))))..)).)))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"
GTTGAATTATAGTTACGATCTCTGGGTTCGTTATTAGTGAAACTGAGGTAGTGTGTGAAAAATCCATGTTTAAGCTTGCAAATGCAGTATTTCTTACTAT
TCGCAAATGATGACAAATAGACGGGACATCAGCACTCTAAG
dot-bracket secondary structure
(((((......((..((.(((.(..((.(((((((.(((((...((((((.(((((.........................))))).))))))......)
)))).)))))))))..).)))))..)).)))))........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Zhao CZ, Xia H, Frazier TP, Yao YY, Bi YP, Li AQ, Li MJ, Li CS, Zhang BH, Wang XJ, BMC Plant Biol. 10:3(2010)., "Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)"
