ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR156
source: miRBase, original name: gma-MIR156a (MI0001784)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* GCTCACTTCTCTATCTGTCAGC mismatches: 0 bulges: 2 |
pre-miRNA
CACACCAGATTGAGAGAGGCTGACAGAAGAGAGTGAGCACATGCTAGTGGTATTTGTATGAGGGCATACAATTGCGGGTGCGTGCTCACTTCTCTATCTG
TCAGCTTCCCATTCTTTTTTAC
dot-bracket secondary structure
......(((.((.(.(((((((((((((((((((((((((..(((....(((.(((((((....))))))).))).)))..)))))))).))))).))))
))))))))))).))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
CACACCAGATTGAGAGAGGCTGACAGAAGAGAGTGAGCACATGCTAGTGGTATTTGTATGAGGGCATACAATTGCGGGTGCGTGCTCACTTCTCTATCTG
TCAGCTTCCCATTCTTTTTTAC
dot-bracket secondary structure
......(((.((.(.(((((((((((((((((((((((((..(((....(((.(((((((....))))))).))).)))..)))))))).))))).))))
))))))))))).))).......
SIMILARITIES| miRBase vvi-MIR156d: 0.00000000000003 PMRD gma-miR156a: 5e-65 microPC miR156: 9e-42 | UniProt no hits RFAM mir-156: 0.00000000000003 |
Identical with: miR156 from microPC (MNEST046794) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
