ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR157
source: miRBase, original name: gma-MIR156c (MI0001772)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* TCTCTTTCCGTTTCTGAGCATGCA mismatches: 6 bulges: 3 |
pre-miRNA
ACTTGACCACTAGGCTTATCTCTTTCCGTTTCTGAGCATGCATACTCATTCACAGCATCAAAATGCACAGATCCTGATGGAGATTGCACAGGGCAGGTGA
TGCTAGATTGCACCATACTCAACTCTGGACTTTGTGATTGAAGTGTTGACAGAAGATAGAGAGCACAACCTGAGTCAAAGGATCC
dot-bracket secondary structure
..(((((...((((.....((((((...((((((..((.((((..(((.((((((..((....((((....(((....)))...))))(((((...(((.
(((......))).)))......)))))))..)))))).))).)))))).))))))..)))))).....)))).))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
ACTTGACCACTAGGCTTATCTCTTTCCGTTTCTGAGCATGCATACTCATTCACAGCATCAAAATGCACAGATCCTGATGGAGATTGCACAGGGCAGGTGA
TGCTAGATTGCACCATACTCAACTCTGGACTTTGTGATTGAAGTGTTGACAGAAGATAGAGAGCACAACCTGAGTCAAAGGATCC
dot-bracket secondary structure
..(((((...((((.....((((((...((((((..((.((((..(((.((((((..((....((((....(((....)))...))))(((((...(((.
(((......))).)))......)))))))..)))))).))).)))))).))))))..)))))).....)))).))))).......
SIMILARITIES| miRBase vvi-MIR156f: 0.0000002 PMRD gma-miR156c: 2e-102 microPC miR157: 0.00004 | UniProt no hits RFAM no hits |
Identical with: gma-miR156c from PMRD (MNEST048530) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
