ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR157
source: miRBase, original name: gma-MIR156e (MI0001771)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTCTAGTCTTCTGTCATCA mismatches: 1 bulges: 1 |
pre-miRNA
AGGAGGTGTTGGTGATGCTGTTGACAGAAGATAGAGAGCACTGATGATGAAATGCATGAAAGGGAATGGCATCTCACTCCTTTGTGCTCTCTAGTCTTCT
GTCATCATCCTTCTCCCTCCCCTC
dot-bracket secondary structure
.(((((.(..((.((((....((((((((((((((((((((.((.(((((.((((((........)).)))).))).)).)).))))))))).)))))))
)))).))))))...))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
AGGAGGTGTTGGTGATGCTGTTGACAGAAGATAGAGAGCACTGATGATGAAATGCATGAAAGGGAATGGCATCTCACTCCTTTGTGCTCTCTAGTCTTCT
GTCATCATCCTTCTCCCTCCCCTC
dot-bracket secondary structure
.(((((.(..((.((((....((((((((((((((((((((.((.(((((.((((((........)).)))).))).)).)).))))))))).)))))))
)))).))))))...))))))....
SIMILARITIES| miRBase ptc-MIR156h: 2e-33 PMRD gma-miR156e: 3e-66 microPC miR157: 2e-42 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
