ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR159
source: miRBase, original name: gma-MIR159a (MI0001773)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTA miRNA* GAGCTCCTTGAAGTCCAATTG mismatches: 3 bulges: 0 |
pre-miRNA
AATTAAAGGGGATTATGAAGTGGAGCTCCTTGAAGTCCAATTGAGGATCTTACTGGGTGAATTGAGCTGCTTAGCTATGGATCCCACAGTTCTACCCATC
AATAAGTGCTTTTGTGGTAGTCTTGTGGCTTCCATATTTGGGGAGCTTCATTTGCCTTTATAGTATTAACCTTCTTTGGATTGAAGGGAGCTCTACACCC
TTCTCTTCTTTTCT
dot-bracket secondary structure
....((((((((.......((((((((((((..(((((((..((((....(((((((..(((.(((((.(((((.((((((..((((((..(((((((..
............)).)))))..))))))..)))))).))))).))))).)))..)))....))))....))))..)))))))..))))))))))))....
...))))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
AATTAAAGGGGATTATGAAGTGGAGCTCCTTGAAGTCCAATTGAGGATCTTACTGGGTGAATTGAGCTGCTTAGCTATGGATCCCACAGTTCTACCCATC
AATAAGTGCTTTTGTGGTAGTCTTGTGGCTTCCATATTTGGGGAGCTTCATTTGCCTTTATAGTATTAACCTTCTTTGGATTGAAGGGAGCTCTACACCC
TTCTCTTCTTTTCT
dot-bracket secondary structure
....((((((((.......((((((((((((..(((((((..((((....(((((((..(((.(((((.(((((.((((((..((((((..(((((((..
............)).)))))..))))))..)))))).))))).))))).)))..)))....))))....))))..)))))))..))))))))))))....
...))))))))...
SIMILARITIES| miRBase pvu-MIR159a: 9e-68 PMRD gma-miR159a: 1e-119 microPC miR159: 5e-94 | UniProt no hits RFAM MIR159: 1e-18 |
Identical with: gma-miR159a from PMRD (MNEST048539) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
