ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR159
source: miRBase, original name: gma-MIR159b (MI0007206)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGGAGTGAAGGGAGCTCCA miRNA* GAGTTCCCTGCACTCCAAGTC mismatches: 2 bulges: 0 |
pre-miRNA
AAACCCAACTTGGAGTTCCCTGCACTCCAAGTCTGAAAGGATATGATGGTAAACCTCTACTGCTAGTTCATGGATACCTCTGACTTCTTAACAACATGCG
TTCGAAGTCAAGGGTTTGCATGCCCTGGGAGATGAGTTTACCTTGATCTTTTGGTATTGGAGTGAAGGGAGCTCCAGAGGGTATTC
dot-bracket secondary structure
..((((...((((((((((((.((((((((..(..(((((.((....(((((((.((..((.((((..((((.(.(((..(((((((..(((.......)
)).)))))))..))).).))))..)))).))..))))))))).)).)))))..)..)))))))).)))))))))))).))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
AAACCCAACTTGGAGTTCCCTGCACTCCAAGTCTGAAAGGATATGATGGTAAACCTCTACTGCTAGTTCATGGATACCTCTGACTTCTTAACAACATGCG
TTCGAAGTCAAGGGTTTGCATGCCCTGGGAGATGAGTTTACCTTGATCTTTTGGTATTGGAGTGAAGGGAGCTCCAGAGGGTATTC
dot-bracket secondary structure
..((((...((((((((((((.((((((((..(..(((((.((....(((((((.((..((.((((..((((.(.(((..(((((((..(((.......)
)).)))))))..))).).))))..)))).))..))))))))).)).)))))..)..)))))))).)))))))))))).))))....
SIMILARITIES| miRBase gma-MIR159c: 0.00000000001 PMRD gma-miR159b: 5e-103 microPC miR159: 4e-91 | UniProt no hits RFAM MIR159: 0.00000001 |
Identical with: miR159 from microPC (MNEST046067) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
