ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR166
source: miRBase, original name: gma-MIR166a (MI0001775)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGCTCGAGG mismatches: 4 bulges: 0 |
pre-miRNA
ACGGAAGCTTTGTCTTTTGAGGGGAATGTTGTCTGGCTCGAGGACCCTTCTTCATCTTGATCTTGTGTAGACTACTATGCTTGTGGTCAAGGAATACATA
GTGTTGTCGGACCAGGCTTCATTCCCCCCAATTATATGCTTCCAAA
dot-bracket secondary structure
..((((((..(((...(((.((((((((..((((((..(((.(((.((......((((((((..((((((....))))))....)))))))).......)
).))).)))..))))))..)))))))).)))..))).))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
ACGGAAGCTTTGTCTTTTGAGGGGAATGTTGTCTGGCTCGAGGACCCTTCTTCATCTTGATCTTGTGTAGACTACTATGCTTGTGGTCAAGGAATACATA
GTGTTGTCGGACCAGGCTTCATTCCCCCCAATTATATGCTTCCAAA
dot-bracket secondary structure
..((((((..(((...(((.((((((((..((((((..(((.(((.((......((((((((..((((((....))))))....)))))))).......)
).))).)))..))))))..)))))))).)))..))).))))))...
SIMILARITIES| miRBase ctr-MIR166: 0.00000000000003 PMRD gma-miR166a: 3e-79 microPC miR166: 0.00000003 | UniProt no hits RFAM mir-166: 0.000000000009 |
Identical with: gma-miR166a from PMRD (MNEST048548) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
