ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR167
source: miRBase, original name: gma-MIR167a (MI0001777)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GGTCATGCTGTGACAGCCTCACT mismatches: 1 bulges: 2 |
pre-miRNA
GAAGTTCGCAAAGGAAAAAGTGAAGCTGCCAGCATGATCTACCTTTGGTTAGAGAGCTCAAGAGTGCTAACCCTGACTAGGTCATGCTGTGACAGCCTCA
CTCCTTCCTATTTGGGGAC
dot-bracket secondary structure
...((((.((((((((..(((((.(((((((((((((((((.....((((((...(((....))).)))))).....)))))))))))).).)))).)))
))..)))))..))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
GAAGTTCGCAAAGGAAAAAGTGAAGCTGCCAGCATGATCTACCTTTGGTTAGAGAGCTCAAGAGTGCTAACCCTGACTAGGTCATGCTGTGACAGCCTCA
CTCCTTCCTATTTGGGGAC
dot-bracket secondary structure
...((((.((((((((..(((((.(((((((((((((((((.....((((((...(((....))).)))))).....)))))))))))).).)))).)))
))..)))))..))).))))
SIMILARITIES| miRBase gma-MIR167b: 1e-31 PMRD gma-miR167a: 3e-63 microPC miR167: 2e-27 | UniProt no hits RFAM MIR167_1: 3e-23 |
Identical with: gma-miR167a from PMRD (MNEST048554) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
