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ABOUT THIS RECORD
ID:
MNEST040442
species:
Glycine max
miRNA family:
MIR167
source:
miRBase, original name:
gma-MIR167b
(
MI0001778
)
Taxonomy by NCBI:
Glycine max
Glycine
Phaseoleae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTA
miRNA*
GGTCATGCTGTGCTAGCCTCACT
mismatches:
1
bulges:
2
View larger
pre-miRNA
AAGGGTCACAAAGGAAAAAG
TGAAGCTGCCAGCATGATCTA
GCTTTGGTTAGTGGGAGCGAGAGAGTGCTAACCCTCACTA
GGTCATGCTGTGCTAGCCT
CACT
CCTTCCTATTTGGAGAC
dot-bracket secondary structure
....(((.((((((((..((
(((.(((((((((((((((((
(....((((((((....(....)..))))))))....)))
)))))))))).)).))).)
))))
..)))))..)))..)))
SIMILARITIES
miRBase
gma-MIR167d
:
1e-59
PMRD
gma-miR167b
:
2e-64
microPC
miR167
:
5e-22
UniProt
no hits
RFAM
MIR167_1: 8e-18
Identical with:
gma-miR167b
from PMRD (
MNEST048555
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
454
deep sequencing data evidence
references
[
1
] Dezulian T, Palatnik JF, Huson DH, Weigel D,
http://genomebiology.com/2005/6/11/p13 (2005).
,
"Conservation and divergence of microRNA families in plants"
[
2
] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O,
BMC Genomics. 9:160(2008).
,
"Novel and nodulation-regulated microRNAs in soybean roots"