ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR167
source: miRBase, original name: gma-MIR167e (MI0010725)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTT miRNA* GATCATGTGGCAGTTTCACC mismatches: 1 bulges: 1 |
pre-miRNA
TCATGCACCACTACCAGTTGAAGCTGCCAGCATGATCTTAACTTCCCTCACTTGCCGTGGAAAGATCAGATCATGTGGCAGTTTCACCTAGTAGTTGCTG
GCCGCATGA
dot-bracket secondary structure
((((((.(((((((.((.(((((((((((.((((((((...(((.((.(.......).)).)))...))))))))))))))))))).)).)))))....)
)..))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned, Northern, Solexa
deep sequencing data evidence
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
[2] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
TCATGCACCACTACCAGTTGAAGCTGCCAGCATGATCTTAACTTCCCTCACTTGCCGTGGAAAGATCAGATCATGTGGCAGTTTCACCTAGTAGTTGCTG
GCCGCATGA
dot-bracket secondary structure
((((((.(((((((.((.(((((((((((.((((((((...(((.((.(.......).)).)))...))))))))))))))))))).)).)))))....)
)..))))))
SIMILARITIES| miRBase gma-MIR167f: 1e-52 PMRD ptc-miR167g: 7e-24 microPC miR167: 4e-19 | UniProt no hits RFAM MIR167_1: 8e-27 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned, Northern, Solexa
deep sequencing data evidence
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
[2] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
