ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR169
source: miRBase, original name: gma-MIR169a (MI0001791)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTTGTGTTTGGCTATG mismatches: 4 bulges: 0 |
pre-miRNA
AAGAGGAAGAGAGAGTGATGCAGCCAAGGATGACTTGCCGGCGTTATTATTTGCTCATGTTCATGCTCACCGGTTTCCTTGCCGGCAAGTTGTGTTTGGC
TATGTTTTGCTCTCTTCTTCT
dot-bracket secondary structure
.((((((((((((...(((..(((((((.(..(((((((((((.....(((((..(((....)))..))..))).....)))))))))))..).))))))
)..)))...))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern
deep sequencing data evidence
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
AAGAGGAAGAGAGAGTGATGCAGCCAAGGATGACTTGCCGGCGTTATTATTTGCTCATGTTCATGCTCACCGGTTTCCTTGCCGGCAAGTTGTGTTTGGC
TATGTTTTGCTCTCTTCTTCT
dot-bracket secondary structure
.((((((((((((...(((..(((((((.(..(((((((((((.....(((((..(((....)))..))..))).....)))))))))))..).))))))
)..)))...))))))))))))
SIMILARITIES| miRBase mtr-MIR169b: 0.00000000003 PMRD gma-miR169a: 2e-64 microPC miR169: 0.00000002 | UniProt no hits RFAM MIR169_2: 0.000002 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern
deep sequencing data evidence
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
