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ABOUT THIS RECORD

ID: MNEST040450
species: Glycine max
miRNA family: MIR169
source: miRBase, original name: gma-MIR169b (MI0007211)

Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAGCCAAGGATGACTTGCCGA

miRNA*
 GGCAAGTCATCTTTGGCTACA

mismatches: 1
bulges: 0
View larger
pre-miRNA
 TATGATGCTGCAGCCAAGGATGACTTGCCGATAAATTCTTTCTCTAATTTGACTTTCAATTCATGTTTGTCAATTGATAGTGCATTAGTTCTAATATATG
CATTTGATTATATAGAACACTATTGTGAAAGTGTCTTTAGGGATAGGGTAAATTCGGCAAGTCATCTTTGGCTACATGTCTAT

dot-bracket secondary structure
...((((.((.((((((((((((((((((((...(((((.(((((((....(((((((....(((((((((....))))).))))..((((((.((((..
(....)..)))))))))).......)))))))....))))))).)))))....)))))))))))))))))))).))))))...


SIMILARITIES
miRBase tcc-MIR169b: 0.0000006

PMRD gma-miR169b: 3e-101

microPC miR169: 0.00004		UniProt no hits

RFAM MIR169_2: 0.00004

Identical with: gma-miR169b from PMRD (MNEST048562)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
deep sequencing data evidence

references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"



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