ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR169_2
source: miRBase, original name: gma-MIR169c (MI0007212)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCCAAGGATGACTTGCCGA miRNA* GGCAGGTCATCCTCTGGCTATA mismatches: 2 bulges: 1 |
pre-miRNA
AAGTGGGATGAAGCCAAGGATGACTTGCCGACATTAATTTGCCATTAAGCTAACGAGTTAGGTAGAATCATTTGTTAGATTTTCCCGGCAGGTCATCCTC
TGGCTATATTTGGCT
dot-bracket secondary structure
.(((.(((((.(((((((((((((((((((...(((((.....))))).(((((((((...........))))))))).......)))))))))))))).
))))).))))).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
AAGTGGGATGAAGCCAAGGATGACTTGCCGACATTAATTTGCCATTAAGCTAACGAGTTAGGTAGAATCATTTGTTAGATTTTCCCGGCAGGTCATCCTC
TGGCTATATTTGGCT
dot-bracket secondary structure
.(((.(((((.(((((((((((((((((((...(((((.....))))).(((((((((...........))))))))).......)))))))))))))).
))))).))))).)))
SIMILARITIES| miRBase ptc-MIR169a: 0.000001 PMRD gma-miR169c: 7e-61 microPC miR169: 0.00009 | UniProt no hits RFAM MIR169_2: 0.000002 |
Identical with: gma-miR169c from PMRD (MNEST048563) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
