ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR169_2
source: miRBase, original name: gma-MIR169d (MI0016571)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGCCAAGGATGACTTGCCGGT miRNA* CGGTTTAAGTCCTTCTTGGTTCTTA mismatches: 3 bulges: 2 |
pre-miRNA
AGATTAGTGGATGTGAGCCAAGGATGACTTGCCGGTTGTATAATAGCACCCGGTTTAAGTCCTTCTTGGTTCTTATTTACTATTCTTA
dot-bracket secondary structure
(((.(((((((((.((((((((((.((((((((((.(((......))).)))))..))))).)))))))))).))))))))).)))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Solexa
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
AGATTAGTGGATGTGAGCCAAGGATGACTTGCCGGTTGTATAATAGCACCCGGTTTAAGTCCTTCTTGGTTCTTATTTACTATTCTTA
dot-bracket secondary structure
(((.(((((((((.((((((((((.((((((((((.(((......))).)))))..))))).)))))))))).))))))))).)))..
SIMILARITIES| miRBase vvi-MIR169m: 0.00000007 PMRD vvi-miR169m: 0.00000007 microPC miR169: 0.00006 | UniProt no hits RFAM MIR169_2: 0.000005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Solexa
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
