ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR169
source: miRBase, original name: gma-MIR169e (MI0016576)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCCAAGGATGACTTGCCGG miRNA* AGCGAGACATCCTTGTTCA mismatches: 2 bulges: 1 |
pre-miRNA
GTCTTGCATGAAGAGGTAGAGAGAGTGCTTTTGAGCCAAGGATGACTTGCCGGCGTAATTACGGGTATTGCCAGCGAGACATCCTTGTTCACTTATGCTC
TCTTTTCACTCATATAAGAC
dot-bracket secondary structure
((((((.((((.(.((.(((((((((.....(((((.(((((((.(((((.((((.............)))).))))).)))))))))))).....))))
))))))).))))).))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
GTCTTGCATGAAGAGGTAGAGAGAGTGCTTTTGAGCCAAGGATGACTTGCCGGCGTAATTACGGGTATTGCCAGCGAGACATCCTTGTTCACTTATGCTC
TCTTTTCACTCATATAAGAC
dot-bracket secondary structure
((((((.((((.(.((.(((((((((.....(((((.(((((((.(((((.((((.............)))).))))).)))))))))))).....))))
))))))).))))).))))))
SIMILARITIES| miRBase vvi-MIR169p: 0.000001 PMRD vvi-miR169p: 0.000001 microPC miR169: 0.000006 | UniProt no hits RFAM MIR169_2: 0.00000003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
