ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR171_1
source: miRBase, original name: gma-MIR171a (MI0007213)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGCCGTGCCAATATCACGA miRNA* AACGGGATATTGGTCCGGTTCAAT mismatches: 4 bulges: 3 |
pre-miRNA
GTTCAACGGGATATTGGTCCGGTTCAATAAGAAAGCAATGCTCAAAATGTTTTTGGGTCCTGTTTTTTCATTGAGCCGTGCCAATATCACGAACCACTGC
TC
dot-bracket secondary structure
((((.....((((((((..(((((((((.((((((((..(((((((.....)))))))..)))))))).)))))))))..))))))))..))))......
..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
GTTCAACGGGATATTGGTCCGGTTCAATAAGAAAGCAATGCTCAAAATGTTTTTGGGTCCTGTTTTTTCATTGAGCCGTGCCAATATCACGAACCACTGC
TC
dot-bracket secondary structure
((((.....((((((((..(((((((((.((((((((..(((((((.....)))))))..)))))))).)))))))))..))))))))..))))......
..
SIMILARITIES| miRBase rco-MIR171a: 4e-25 PMRD gma-miR171a: 4e-53 microPC miR171: 5e-43 | UniProt no hits RFAM MIR171_1: 7e-24 |
Identical with: miR171 from microPC (MNEST046750) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
