ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR172
source: miRBase, original name: gma-MIR172a (MI0001780)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCTTGATGATGCTGCAT miRNA* GTAGCATCATCAAGATTCACA mismatches: 1 bulges: 0 |
pre-miRNA
TTAACAGTCGTTATTTGCGGATGTAGCATCATCAAGATTCACATGCAAGCGCAGGTGGTGGGTGGGACTTGATGCAATCTAAGTGCTGTGCCAGCCAAGC
CATAGGTCTTTTGGAACTGAGAATCTTGATGATGCTGCATCAGCCATAAACGACTTCAC
dot-bracket secondary structure
.....(((((((....((.(((((((((((((((((((((.(((.((((.((..(((((((.(((.((.....(((.......))).)).))).))..))
)))..))..)))).)..)).))))))))))))))))))))).))....)))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern
deep sequencing data evidence
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
TTAACAGTCGTTATTTGCGGATGTAGCATCATCAAGATTCACATGCAAGCGCAGGTGGTGGGTGGGACTTGATGCAATCTAAGTGCTGTGCCAGCCAAGC
CATAGGTCTTTTGGAACTGAGAATCTTGATGATGCTGCATCAGCCATAAACGACTTCAC
dot-bracket secondary structure
.....(((((((....((.(((((((((((((((((((((.(((.((((.((..(((((((.(((.((.....(((.......))).)).))).))..))
)))..))..)))).)..)).))))))))))))))))))))).))....)))))))....
SIMILARITIES| miRBase gma-MIR172f: 2e-46 PMRD gma-miR172a: 6e-87 microPC miR172: 0.000008 | UniProt no hits RFAM mir-172: 0.0000000002 |
Identical with: gma-miR172a from PMRD (MNEST048570) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern
deep sequencing data evidence
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
