ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR172
source: miRBase, original name: gma-MIR172c (MI0010727)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATCTTGATGATGCTGCAG miRNA* GGAGCATCATCAAGATTCACA mismatches: 3 bulges: 0 |
pre-miRNA
AAATCAGTCACTGTTTGCCGGTGGAGCATCATCAAGATTCACAAGCTTTAGGGGCATTAATTTGTTTGAGGTGGTTCCTTATTGCTCCAAAACCAATTAG
CCCTTTTGCTATGGGAATCTTGATGATGCTGCAGCAGCAATAAATGACTAATA
dot-bracket secondary structure
.....(((((....((((.(.((.((((((((((((((((.(((((...((((((..(((((..((((..(..((.....))..)..))))...))))))
)))))..))).)).)))))))))))))))).)).).))))....)))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned, Northern
deep sequencing data evidence
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
AAATCAGTCACTGTTTGCCGGTGGAGCATCATCAAGATTCACAAGCTTTAGGGGCATTAATTTGTTTGAGGTGGTTCCTTATTGCTCCAAAACCAATTAG
CCCTTTTGCTATGGGAATCTTGATGATGCTGCAGCAGCAATAAATGACTAATA
dot-bracket secondary structure
.....(((((....((((.(.((.((((((((((((((((.(((((...((((((..(((((..((((..(..((.....))..)..))))...))))))
)))))..))).)).)))))))))))))))).)).).))))....)))))....
SIMILARITIES| miRBase gma-MIR172e: 3e-67 PMRD ptc-miRf10126-akr: 0.00000000003 microPC miR172: 0.000008 | UniProt no hits RFAM mir-172: 0.000000000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned, Northern
deep sequencing data evidence
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
