ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR172
source: miRBase, original name: gma-MIR172d (MI0010728)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATCTTGATGATGCTGCAGCAG miRNA* GATGGAGCATCATCAAGATTCACA mismatches: 5 bulges: 0 |
pre-miRNA
AAAACAGTCGCTGATTGCAGATGGAGCATCATCAAGATTCACAAGCTTCAGGGGTTTTTTGTTTGGGGTGGTCCCTTATTGCTCCCAAATGAATTAAGCC
CTTTGATATGGGAATCTTGATGATGCTGCAGCAGCAATAAACGACTAACA
dot-bracket secondary structure
.....(((((...(((((...((.((((((((((((((((.((....((((((((((((..(((((((..((.....))..).))))))..))..)))))
).))))..)).)))))))))))))))).))...)))))...)))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
AAAACAGTCGCTGATTGCAGATGGAGCATCATCAAGATTCACAAGCTTCAGGGGTTTTTTGTTTGGGGTGGTCCCTTATTGCTCCCAAATGAATTAAGCC
CTTTGATATGGGAATCTTGATGATGCTGCAGCAGCAATAAACGACTAACA
dot-bracket secondary structure
.....(((((...(((((...((.((((((((((((((((.((....((((((((((((..(((((((..((.....))..).))))))..))..)))))
).))))..)).)))))))))))))))).))...)))))...)))))....
SIMILARITIES| miRBase gma-MIR172c: 6e-31 PMRD vvi-miR172c: 0.000000000008 microPC miR172: 0.000007 | UniProt no hits RFAM mir-172: 0.00000000000001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
