ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR172
source: miRBase, original name: gma-MIR172e (MI0010729)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATCTTGATGATGCTGCAGCAG miRNA* GGTGGAGCATCATCAAGATTCACA mismatches: 4 bulges: 0 |
pre-miRNA
AAAACAGTCACTGTTTGCCGGTGGAGCATCATCAAGATTCACAAGCTTTAGGGGGCATTAATTTGTTTGAGGTGGTCCCTTATTGATCCAAACCAATTAG
CCCTTTTGCTATGGGAATCTTGATGATGCTGCAGCAGCAATAAATGACTAATA
dot-bracket secondary structure
.....(((((....((((.(.((.((((((((((((((((.(((((...(((((((..(((((.(((((.(((.(........).)))))))).))))))
)))))).))).)).)))))))))))))))).)).).))))....)))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
AAAACAGTCACTGTTTGCCGGTGGAGCATCATCAAGATTCACAAGCTTTAGGGGGCATTAATTTGTTTGAGGTGGTCCCTTATTGATCCAAACCAATTAG
CCCTTTTGCTATGGGAATCTTGATGATGCTGCAGCAGCAATAAATGACTAATA
dot-bracket secondary structure
.....(((((....((((.(.((.((((((((((((((((.(((((...(((((((..(((((.(((((.(((.(........).)))))))).))))))
)))))).))).)).)))))))))))))))).)).).))))....)))))....
SIMILARITIES| miRBase gma-MIR172c: 3e-67 PMRD ptc-miRf10126-akr: 0.00000000003 microPC miR172: 0.000008 | UniProt no hits RFAM mir-172: 6e-16 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
