ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR172
source: miRBase, original name: gma-MIR172f (MI0016574)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCTTGATGATGCTGCA miRNA* TAGCATCATCAAGATTCACA mismatches: 1 bulges: 0 |
pre-miRNA
GCGGATGTAGCATCATCAAGATTCACATGCAAACGCAGGTGGTGGGTGGGACTGTGATGCAATCTAAGTGCTACTGTGCCAACCAAAGCCATAGGTCTTT
TGGAAGTGAGAATCTTGATGATGCTGCATCAGC
dot-bracket secondary structure
((.(((((((((((((((((((((.(((.((((.((..(((((.(((((.((.(((..((.......))..))).)).)).)))...)))))..))..))
))...))).))))))))))))))))))))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
GCGGATGTAGCATCATCAAGATTCACATGCAAACGCAGGTGGTGGGTGGGACTGTGATGCAATCTAAGTGCTACTGTGCCAACCAAAGCCATAGGTCTTT
TGGAAGTGAGAATCTTGATGATGCTGCATCAGC
dot-bracket secondary structure
((.(((((((((((((((((((((.(((.((((.((..(((((.(((((.((.(((..((.......))..))).)).)).)))...)))))..))..))
))...))).))))))))))))))))))))).))
SIMILARITIES| miRBase gma-MIR172a: 2e-46 PMRD gma-miR172a: 2e-46 microPC miR172: 0.000002 | UniProt no hits RFAM mir-172: 0.0000000005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
