ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR159
source: miRBase, original name: gma-MIR319c (MI0001789)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGACTGAAAGGAGCTCCT miRNA* GAGCTTCCCTCAGCCCATTC mismatches: 4 bulges: 0 |
pre-miRNA
TTGGGAGGGAAAGAGAGTGAAGGAGCTTCCCTCAGCCCATTCATGGAGATAACGAAAGATTGGGTTGCTGAATTAACTGCTAGCTCACACATTCATTCAT
ACAATAGTATTCAATTAGGGTAATATTGTGTGAATGAAGCGGGAGTATATAGTATCTATATTGCAACCCTCTTTCTCTGTGCTTGGACTGAAAGGAGCTC
CTTCTTTTTCTGCTCCCTCCA
dot-bracket secondary structure
...(((((((.((((((.(((((((((((..((((.(((..((((((((...(....)...(((((((.....((..(((((((((.(...(((((((((
((((((.(((((.....))))).)))))))))))))))...)))))...)))))..))....)))))))....))))))))..))).))))..)))))))
)))).))))))..))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
TTGGGAGGGAAAGAGAGTGAAGGAGCTTCCCTCAGCCCATTCATGGAGATAACGAAAGATTGGGTTGCTGAATTAACTGCTAGCTCACACATTCATTCAT
ACAATAGTATTCAATTAGGGTAATATTGTGTGAATGAAGCGGGAGTATATAGTATCTATATTGCAACCCTCTTTCTCTGTGCTTGGACTGAAAGGAGCTC
CTTCTTTTTCTGCTCCCTCCA
dot-bracket secondary structure
...(((((((.((((((.(((((((((((..((((.(((..((((((((...(....)...(((((((.....((..(((((((((.(...(((((((((
((((((.(((((.....))))).)))))))))))))))...)))))...)))))..))....)))))))....))))))))..))).))))..)))))))
)))).))))))..))))))).
SIMILARITIES| miRBase pvu-MIR319c: 1e-17 PMRD gma-miR319c: 8e-124 microPC miR319: 6e-97 | UniProt no hits RFAM MIR159: 0.00000000006 |
Identical with: gma-miR319c from PMRD (MNEST048574) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
