ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR390
source: miRBase, original name: gma-MIR390b (MI0007215)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGCACC miRNA* CGCTATCTATCTTGAGCTTCA mismatches: 2 bulges: 0 |
pre-miRNA
AGAATCTGTAAAGCTCAGGAGGGATAGCACCGTGATACTGATGATTATATGTTCATAGTTGTATACGTACTTGGCGCTATCTATCTTGAGCTTCATGGCT
TCT
dot-bracket secondary structure
((((.((((.((((((((((.(((((((.(((.(.(((..(..(((((......)))))..)....)))).))).))))))).)))))))))).)))).)
)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Solexa
deep sequencing data evidence
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
AGAATCTGTAAAGCTCAGGAGGGATAGCACCGTGATACTGATGATTATATGTTCATAGTTGTATACGTACTTGGCGCTATCTATCTTGAGCTTCATGGCT
TCT
dot-bracket secondary structure
((((.((((.((((((((((.(((((((.(((.(.(((..(..(((((......)))))..)....)))).))).))))))).)))))))))).)))).)
)))
SIMILARITIES| miRBase tcc-MIR390b: 0.000000005 PMRD gma-miR390b: 9e-54 microPC miR390: 0.00008 | UniProt no hits RFAM MIR390: 0.00000009 |
Identical with: gma-miR390b from PMRD (MNEST048575) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Solexa
deep sequencing data evidence
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
