ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR394
source: miRBase, original name: gma-MIR394a (MI0016582)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCTCTGTTGGCTACACTTT miRNA* AGTGTTGCTAACAGAGTTTA mismatches: 1 bulges: 0 |
pre-miRNA
ATCATGAGGGTTTAGCAAAGTGTTGCTAACAGAGTTTATTGGCATTCTGTCCACCTCCACTTCCTACTCTCTCTCTCTCTCTCTCTACCCATGAATATGG
AGGTGGGCATACTGTCAACTGAGCTCTGTTGGCTACACTTTGTAAAGCCTTCATGAT
dot-bracket secondary structure
(((((((((((((.(((((((((.((((((((((((((((((((.(.((((((((((((.(((.............................)))..)))
))))))))).).)))))).)))))))))))))).))))))))).)))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
ATCATGAGGGTTTAGCAAAGTGTTGCTAACAGAGTTTATTGGCATTCTGTCCACCTCCACTTCCTACTCTCTCTCTCTCTCTCTCTACCCATGAATATGG
AGGTGGGCATACTGTCAACTGAGCTCTGTTGGCTACACTTTGTAAAGCCTTCATGAT
dot-bracket secondary structure
(((((((((((((.(((((((((.((((((((((((((((((((.(.((((((((((((.(((.............................)))..)))
))))))))).).)))))).)))))))))))))).))))))))).)))))))))))))
SIMILARITIES| miRBase gma-MIR394b: 6e-16 PMRD ptc-miRf10096-akr: 0.00000000003 microPC miR394: 0.000000008 | UniProt no hits RFAM MIR394: 0.00000000004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
