ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR396
source: miRBase, original name: gma-MIR396a (MI0001785)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GTTCAATAAAGCTGTGGGAAG mismatches: 1 bulges: 0 |
pre-miRNA
TCATGGCTCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCCAAAGAGTTCCTTTGCATGCATGCCATGGCACTCTTACTCCCAAATCTTGTTTTG
CGGTTCAATAAAGCTGTGGGAAGATACAGATAGGGTCAAC
dot-bracket secondary structure
...(((((((.(((((((..((((((((((((.((((((((((....((((((.((...(((....)))...)).)))))).....((.....))...))
)))))))).))))))))))))..))))))).)))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Northern
deep sequencing data evidence
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
TCATGGCTCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCCAAAGAGTTCCTTTGCATGCATGCCATGGCACTCTTACTCCCAAATCTTGTTTTG
CGGTTCAATAAAGCTGTGGGAAGATACAGATAGGGTCAAC
dot-bracket secondary structure
...(((((((.(((((((..((((((((((((.((((((((((....((((((.((...(((....)))...)).)))))).....((.....))...))
)))))))).))))))))))))..))))))).)))))))..
SIMILARITIES| miRBase mtr-MIR396b: 0.000000000000002 PMRD gma-miR396a: 1e-75 microPC miR396: 2e-52 | UniProt no hits RFAM MIR396: 4e-17 |
Identical with: gma-miR396a from PMRD (MNEST048578) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Northern
deep sequencing data evidence
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
