ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR396
source: miRBase, original name: gma-MIR396c (MI0010572)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GTTTAAGAAAAATGTGGAAAA mismatches: 2 bulges: 0 |
pre-miRNA
CAACAAGTCCTGTTATGCTTTTCCACAGCTTTCTTGAACTTCTTATGCCTAGTGCAATTATTGATGTGGCATAGAAGTTTAAGAAAAATGTGGAAAAACA
TGTCAAATCTAGGACTT
dot-bracket secondary structure
....((((((((.((((.(((((((((..((((((((((((((.(((((.....((.....))....)))))))))))))))))))..))))))))).))
)).......))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
CAACAAGTCCTGTTATGCTTTTCCACAGCTTTCTTGAACTTCTTATGCCTAGTGCAATTATTGATGTGGCATAGAAGTTTAAGAAAAATGTGGAAAAACA
TGTCAAATCTAGGACTT
dot-bracket secondary structure
....((((((((.((((.(((((((((..((((((((((((((.(((((.....((.....))....)))))))))))))))))))..))))))))).))
)).......))))))))
SIMILARITIES| miRBase gma-MIR396d: 0.000000000002 PMRD gma-miR396c: 5e-62 microPC miR396: 0.000001 | UniProt no hits RFAM MIR396: 0.000000007 |
Identical with: gma-miR396c from PMRD (MNEST048580) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
