ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR396
source: miRBase, original name: gma-MIR396d (MI0016503)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGAAAGCTGTGGGAGAATATGGC miRNA* CATGCTTTTCCACAGCTTTCTTGA mismatches: 1 bulges: 0 |
pre-miRNA
GGTCATGCTTTTCCACAGCTTTCTTGAACTTCTTATGCATCTTATATCTCTCCACTTCCAGCATTTTAAGCCCTAGAAGCTCAAGAAAGCTGTGGGAGAA
TATGGCAA
dot-bracket secondary structure
.((((((.(((((((((((((((((((.(((((...((...............................))...))))).))))))))))))))))))).
))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
GGTCATGCTTTTCCACAGCTTTCTTGAACTTCTTATGCATCTTATATCTCTCCACTTCCAGCATTTTAAGCCCTAGAAGCTCAAGAAAGCTGTGGGAGAA
TATGGCAA
dot-bracket secondary structure
.((((((.(((((((((((((((((((.(((((...((...............................))...))))).))))))))))))))))))).
))))))..
SIMILARITIES| miRBase gma-MIR396b: 6e-52 PMRD gma-miR396b: 6e-52 microPC miR396: 0.000001 | UniProt no hits RFAM MIR396: 4e-19 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
