ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR482
source: miRBase, original name: gma-MIR482b (MI0016527)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGGGGGGATTGGGAAGGAAT miRNA* TTCTTCCCTACACCTCCCATACC mismatches: 3 bulges: 1 |
pre-miRNA
GGTATGGGGGGATTGGGAAGGAATATCCATAAGCAAAATATGCTATTTCTTCCCTACACCTCCCATACC
dot-bracket secondary structure
(((((((((((...(((((((((((..((((.......)))).)))))))))))....)))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
GGTATGGGGGGATTGGGAAGGAATATCCATAAGCAAAATATGCTATTTCTTCCCTACACCTCCCATACC
dot-bracket secondary structure
(((((((((((...(((((((((((..((((.......)))).)))))))))))....)))))))))))
SIMILARITIES| miRBase gso-MIR482a: 1e-33 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: gso-MIR482a from miRBase (MNEST040633) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
