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ABOUT THIS RECORD

ID: MNEST040487
species: Glycine max
miRNA family: MIR1509
source: miRBase, original name: gma-MIR1509a (MI0007221)

Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTAATCAAGGAAATCACGGTCG

miRNA*
ACCGTGTTTCCTTGGTTAACG

mismatches: 0
bulges: 1

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pre-miRNA
CTGCATCTTCTTAATCAAGGAAATCACGGTCGCGTGTGTGCCGGAAAGAAAGTGGCCTGTGATCTCCGGTTTCTCTTTCTCGACCGTGTTTCCTTGGTTA
ACG
ATATGTGC


dot-bracket secondary structure
..((((..(((((((((((((((.((((((((.(.(.(.((((((.....((....))......))))))..).)...).))))))))))))))))))))
).)
)...))))



SIMILARITIES
miRBase gso-MIR1509a: 3e-57

PMRD no hits

microPC miR1509: 1e-46
UniProt no hits

RFAM no hits

Identical with: gso-MIR1509a from miRBase (MNEST040638)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, cloned, Solexa
deep sequencing data evidence

references

[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
[2] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
[3] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"




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