ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR1510
source: miRBase, original name: gma-MIR1510a (MI0007222)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGGATAGGTAAAACAATGACTGC miRNA* TAGTTGTTGTTTTACCTATTCCACC mismatches: 3 bulges: 1 |
pre-miRNA
TTATGGAACTGGAGGGATAGGTAAAACAATGACTGCTGTATAAGTAATTGTTATAGTTAGTTGTTGTTTTACCTATTCCACCCATTCCATGTA
dot-bracket secondary structure
.(((((((..((.((((((((((((((((..((((((((((((....))).))))).))))..)))))))))))))))).))..)))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
[2] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
[3] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
TTATGGAACTGGAGGGATAGGTAAAACAATGACTGCTGTATAAGTAATTGTTATAGTTAGTTGTTGTTTTACCTATTCCACCCATTCCATGTA
dot-bracket secondary structure
.(((((((..((.((((((((((((((((..((((((((((((....))).))))).))))..)))))))))))))))).))..)))))))..
SIMILARITIES| miRBase gso-MIR1510a: 7e-48 PMRD gma-miR1510a: 7e-48 microPC miR1510: 2e-33 | UniProt no hits RFAM no hits |
Identical with: gso-MIR1510a from miRBase (MNEST040639) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
[2] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
[3] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
