ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR1513
source: miRBase, original name: gma-MIR1513 (MI0007225)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGAGAAAGCCATGACTTAC miRNA* AAGTCATGGTTTTCTCTCATA mismatches: 1 bulges: 0 |
pre-miRNA
GGATCAGATATGAGAGAAAGCCATGACTTACACACACATTGAAATCTTAGTTTTAAATGTGTATAAGTCATGGTTTTCTCTCATATCTAATCC
dot-bracket secondary structure
((((.(((((((((((((((((((((((((.(((((..(((((((....))))))).))))).))))))))))))))))))))))))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Northern
deep sequencing data evidence
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
GGATCAGATATGAGAGAAAGCCATGACTTACACACACATTGAAATCTTAGTTTTAAATGTGTATAAGTCATGGTTTTCTCTCATATCTAATCC
dot-bracket secondary structure
((((.(((((((((((((((((((((((((.(((((..(((((((....))))))).))))).))))))))))))))))))))))))).))))
SIMILARITIES| miRBase no hits PMRD gma-miR1513: 7e-48 microPC no hits | UniProt no hits RFAM no hits |
Identical with: gma-miR1513 from PMRD (MNEST048596) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Northern
deep sequencing data evidence
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
