ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR1514
source: miRBase, original name: gma-MIR1514b (MI0007227)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCATTTTTAAAATAGACATT miRNA* TGCCTATTTTAAAATGAAAA mismatches: 1 bulges: 1 |
pre-miRNA
CTTTGCTATTTTCATTTTTAAAATAGACATTGGGCTTCTTCTTGTTCCTCTTTTTTCCTTCCAATTCCGATTTGGTCCTAATGCCTATTTTAAAATGAAA
ACAATGATA
dot-bracket secondary structure
........((((((((((.(((((((.(((((((((...((...........................))...)).))))))).))))))))))))))))
)........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
CTTTGCTATTTTCATTTTTAAAATAGACATTGGGCTTCTTCTTGTTCCTCTTTTTTCCTTCCAATTCCGATTTGGTCCTAATGCCTATTTTAAAATGAAA
ACAATGATA
dot-bracket secondary structure
........((((((((((.(((((((.(((((((((...((...........................))...)).))))))).))))))))))))))))
)........
SIMILARITIES| miRBase gma-MIR1514a: 0.00000000002 PMRD gma-miR1514b: 3e-57 microPC miR1514: 0.00002 | UniProt no hits RFAM no hits |
Identical with: gma-miR1514b from PMRD (MNEST048598) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
