ABOUT THIS RECORDspecies: Glycine max
source: miRBase, original name: gma-MIR1516 (MI0007229)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAAAAGAGCTTATGGCTTGTA miRNA* CAAGTTATAAGCTCTTTTGAG mismatches: 0 bulges: 0 |
pre-miRNA
CATGTTTGGATACAAGTTATAAGCTCTTTTGAGAGCTTCTCTACAGAAAATATATTATATATTTCCGGTAGAGAAGCTCTCAAAAGAGCTTATGGCTTGT
ATCCAAACAGA
dot-bracket secondary structure
..((((((((((((((((((((((((((((((((((((((((((.(.(((((((...))))))).).)))))))))))))))))))))))))))))))))
)))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
CATGTTTGGATACAAGTTATAAGCTCTTTTGAGAGCTTCTCTACAGAAAATATATTATATATTTCCGGTAGAGAAGCTCTCAAAAGAGCTTATGGCTTGT
ATCCAAACAGA
dot-bracket secondary structure
..((((((((((((((((((((((((((((((((((((((((((.(.(((((((...))))))).).)))))))))))))))))))))))))))))))))
)))))))))..
SIMILARITIES| miRBase no hits PMRD gma-miR1516: 2e-58 microPC no hits | UniProt no hits RFAM no hits |
Identical with: gma-miR1516 from PMRD (MNEST048600) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
