ABOUT THIS RECORDspecies: Glycine max
source: miRBase, original name: gma-MIR1518 (MI0007231)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTGTAAAGTGAATATCA miRNA* ATATTCACCACAATCACACT mismatches: 1 bulges: 3 |
pre-miRNA
ATGTGCAAAATGTGTTGTAAAGTGAATATCATCGGCACATAGGTCATGAGATCAACATTGACAGATTTACAGGCAGCCTTGACGTGAGAACACGATAAAT
GTTTAGCCTGATATTCACCACAATCACACTTTTGGAAT
dot-bracket secondary structure
.....(((((((((((((...((((((((((..(((.....((((....)))).(((((..........((((....)))).((((....))))...)))
))...))))))))))))).)))).)))).)))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
ATGTGCAAAATGTGTTGTAAAGTGAATATCATCGGCACATAGGTCATGAGATCAACATTGACAGATTTACAGGCAGCCTTGACGTGAGAACACGATAAAT
GTTTAGCCTGATATTCACCACAATCACACTTTTGGAAT
dot-bracket secondary structure
.....(((((((((((((...((((((((((..(((.....((((....)))).(((((..........((((....)))).((((....))))...)))
))...))))))))))))).)))).)))).)))))....
SIMILARITIES| miRBase no hits PMRD gma-miR1518: 2e-74 microPC no hits | UniProt no hits RFAM no hits |
Identical with: gma-miR1518 from PMRD (MNEST048602) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
