ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR1520
source: miRBase, original name: gma-MIR1520a (MI0007235)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGAACATGATACATGACAGTCA miRNA* ACTGTTGTGTCATGTTCTGAT mismatches: 0 bulges: 2 |
pre-miRNA
AAAGGAATGTTGACCGTCATGTGTCATGTTCTTATTGGATGATGACTGTTGTGTCATGTTCTGATTGGTCAATGAAAATAACAATGCATTTCATCTTTTA
TGGAGTTGACATCCAATTAGAACATGATACATGACAGTCATCATCCAATA
dot-bracket secondary structure
..((((((((.(((........)))))))))))((((((((((((((((((((((((((((((((((((((((....((((..(((.....)))...)))
)...)))))...)))))))))))))))))))..)))))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
AAAGGAATGTTGACCGTCATGTGTCATGTTCTTATTGGATGATGACTGTTGTGTCATGTTCTGATTGGTCAATGAAAATAACAATGCATTTCATCTTTTA
TGGAGTTGACATCCAATTAGAACATGATACATGACAGTCATCATCCAATA
dot-bracket secondary structure
..((((((((.(((........)))))))))))((((((((((((((((((((((((((((((((((((((((....((((..(((.....)))...)))
)...)))))...)))))))))))))))))))..)))))))))))))))).
SIMILARITIES| miRBase gma-MIR1520k: 3e-33 PMRD gma-miR1520a: 1e-81 microPC no hits | UniProt no hits RFAM no hits |
Identical with: gma-miR1520a from PMRD (MNEST048604) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
