ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR1520
source: miRBase, original name: gma-MIR1520d (MI0007233)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCAGAACATGACACGTGACAA miRNA* ATCACATGTCATGTTCTGATTG mismatches: 3 bulges: 0 |
pre-miRNA
ATGATGACTATCACATGTCATGTTCTGATTGGATGTTAACTCTATGAAAAAACAAATACATTGTTGTTTTCATTGATCAATCAGAACATGACACGTGACA
ATTATCATCCA
dot-bracket secondary structure
(((((((.(.((((.(((((((((((((((((........((.((((((((((((.....))))).))))))).))))))))))))))))))).)))).)
.)))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
ATGATGACTATCACATGTCATGTTCTGATTGGATGTTAACTCTATGAAAAAACAAATACATTGTTGTTTTCATTGATCAATCAGAACATGACACGTGACA
ATTATCATCCA
dot-bracket secondary structure
(((((((.(.((((.(((((((((((((((((........((.((((((((((((.....))))).))))))).))))))))))))))))))).)))).)
.)))))))...
SIMILARITIES| miRBase gma-MIR1520k: 7e-27 PMRD gma-miR1520d: 2e-58 microPC miR1520: 0.00008 | UniProt no hits RFAM no hits |
Identical with: gma-miR1520d from PMRD (MNEST048607) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
