ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR1520
source: miRBase, original name: gma-MIR1520m (MI0016534)
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATCAGAACATGACATGTGACAAT miRNA* TGTTACGTGCCATGTTCTGATTGG mismatches: 3 bulges: 0 |
pre-miRNA
TTCTTATTGGATGATGACTGTTACGTGCCATGTTCTGATTGGATGTCAACTCCATAAAAGATGAAATGAATTGTTGTTTTCATTTATCAATCAGAACATG
ACATGTGACAATTATCATTCAATAAGAA
dot-bracket secondary structure
.((((((((((((((((.(((((((((.(((((((((((((((.(....))))).....((((((.((((........)))))))))).)))))))))))
.))))))))).)))))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
TTCTTATTGGATGATGACTGTTACGTGCCATGTTCTGATTGGATGTCAACTCCATAAAAGATGAAATGAATTGTTGTTTTCATTTATCAATCAGAACATG
ACATGTGACAATTATCATTCAATAAGAA
dot-bracket secondary structure
.((((((((((((((((.(((((((((.(((((((((((((((.(....))))).....((((((.((((........)))))))))).)))))))))))
.))))))))).)))))))))))))))).
SIMILARITIES| miRBase gma-MIR1520e: 4e-35 PMRD gma-miR1520a: 8e-30 microPC miR1520: 0.000002 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G, BMC Bioinformatics. 11 Suppl 1:S14(2010)., "Prediction of novel miRNAs and associated target genes in Glycine max"
