ABOUT THIS RECORDspecies: Glycine soja
miRNA family: MIR1508
source: miRBase, original name: gso-MIR1508a (MI0015358)
Taxonomy by NCBI:
Glycine soja Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGAAAGGGAAATAGCAGTTG miRNA* ACTGCTATTCCCATTTCTAAA mismatches: 0 bulges: 2 |
pre-miRNA
TTGAATTGCTATCCAACTGCTATTCCCATTTCTAAACCTTGTTACACGAGCATCTTGATCAATGGTCTAGAAAGGGAAATAGCAGTTGAGTGGTGCTTCA
A
dot-bracket secondary structure
.((((..((((..((((((((((((((.((((((.((((((.....((((...))))..))).))).))))))))).)))))))))))..))))..))))
.
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Chen R, Hu Z, Zhang H, J Integr Plant Biol. 51:1071-1079(2009)., "Identification of microRNAs in wild soybean (Glycine soja)"
TTGAATTGCTATCCAACTGCTATTCCCATTTCTAAACCTTGTTACACGAGCATCTTGATCAATGGTCTAGAAAGGGAAATAGCAGTTGAGTGGTGCTTCA
A
dot-bracket secondary structure
.((((..((((..((((((((((((((.((((((.((((((.....((((...))))..))).))).))))))))).)))))))))))..))))..))))
.
SIMILARITIES| miRBase gma-MIR1508a: 5e-49 PMRD gma-miR1508a: 5e-49 microPC miR1508: 5e-37 | UniProt no hits RFAM no hits |
Identical with: gma-MIR1508a from miRBase (MNEST040485) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Chen R, Hu Z, Zhang H, J Integr Plant Biol. 51:1071-1079(2009)., "Identification of microRNAs in wild soybean (Glycine soja)"
