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ABOUT THIS RECORD

ID: MNEST040638
species: Glycine soja
miRNA family: MIR1509
source: miRBase, original name: gso-MIR1509a (MI0015368)

Taxonomy by NCBI:
Glycine soja Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTAATCAAGGAAATCACGGTCG

miRNA*
ACCGTGTTTCCTTGGTTAACG

mismatches: 0
bulges: 1

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pre-miRNA
GCATCTTCTTAATCAAGGAAATCACGGTCGCGTGTGTGCCGGAAAGAAAGTGGCCTGTGATCTCCGGTTTCTCTTTCTCGACCGTGTTTCCTTGGTTAAC
G
ATATGTGC


dot-bracket secondary structure
((((..(((((((((((((((.((((((((.(.(.(.((((((.....((....))......))))))..).)...).))))))))))))))))))))).
)
)...))))



SIMILARITIES
miRBase gma-MIR1509a: 3e-57

PMRD no hits

microPC miR1509: 1e-46
UniProt no hits

RFAM no hits

Identical with: gma-MIR1509a from miRBase (MNEST040487)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern

references

[1] Chen R, Hu Z, Zhang H, J Integr Plant Biol. 51:1071-1079(2009)., "Identification of microRNAs in wild soybean (Glycine soja)"




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