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ABOUT THIS RECORD
ID:
MNEST040638
species:
Glycine soja
miRNA family:
MIR1509
source:
miRBase, original name:
gso-MIR1509a
(
MI0015368
)
Taxonomy by NCBI:
Glycine soja
Glycine
Phaseoleae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTAATCAAGGAAATCACGGTCG
miRNA*
ACCGTGTTTCCTTGGTTAACG
mismatches:
0
bulges:
1
View larger
pre-miRNA
GCATCTTC
TTAATCAAGGAAATCACGGTCG
CGTGTGTGCCGGAAAGAAAGTGGCCTGTGATCTCCGGTTTCTCTTTCTCG
ACCGTGTTTCCTTGGTTAAC
G
ATATGTGC
dot-bracket secondary structure
((((..((
(((((((((((((.((((((((
.(.(.(.((((((.....((....))......))))))..).)...).))
))))))))))))))))))).
)
)...))))
SIMILARITIES
miRBase
gma-MIR1509a
:
3e-57
PMRD
no hits
microPC
miR1509
:
1e-46
UniProt
no hits
RFAM
no hits
Identical with:
gma-MIR1509a
from miRBase (
MNEST040487
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned, Northern
references
[
1
] Chen R, Hu Z, Zhang H,
J Integr Plant Biol. 51:1071-1079(2009).
,
"Identification of microRNAs in wild soybean (Glycine soja)"